I did the silicone mod like posted in the pics.. (minus the white gear) when i put the pump back on and filled it up with oil, oil started leaking around the pump.
Sorry, I gotta clarify first: you
did remove the white gear and you filled the transmission case with oil? Did you degrease the pieces of tubing as described before you tried to put silicone in them? If not the silicone will just fall out if there is any pressure.
So i pulled the pump off again and I put gasket maker around it, left it to dry and filled it again and I still get the leak. Not sure what to do now. I stripped one of the screws taking the pump off and found another 1 that was 4-6 threads longer then the original. Maybe when I put that one on I pierced through the case? kinda hard to see exactly where its leaking from but its def around the pump.
If you look back up at picture #2, (with the pump cover removed) the pump is visible and the clutch cover is still sealed. You should be able to see where a leak is coming from. If it's coming from around the pump or from a poorly plugged nipple, you know where your leak is. If it's from around the pump, take it off and scrape off the liquid gasket. Reapply it in an even, fairly thin layer and wait only 1/2 hour, then put the pump back on. Better yet, just order the gasket (it's only a couple of bucks) BTW, you can get away with not draining the oil again if you turn the bike up onto it's left side before you take the pump off.
If you drove a screw through the clutch cover, I'd think you would have noticed it getting really difficult to turn when you got near the bottom. Knowing it was too long to begin with, you should've stopped turning. If this did happen, I suggest you take the clutch cover back off and clean and
de-grease the cover really well.
Cut the screw to the proper length and clean up the end of the threads with a file. Test it in a nut with the same size threads. Put a dab of grease on the tip of your screw and put it back into the hole where it punched through. Then get some JB Weld and patch the hole from the inside. The bit of grease on the tip is to keep the JB Weld from sticking to the screw when it hardens. The screw is to keep you from over filling the hole from the inside of the cover.
Get a new clutch cover gasket and put it all back together (I just bought one off of flea bay for $8 shipped) paying careful attention to put the screws for the clutch cover back into the same holes they came out of.
Refill the tranny with oil and inspect for leaks again. If you work slowly and carefully, paying attention to every thing you're touching and how things feel as you work, you should be OK. Just remember, If your forcing it to get it back together, there's probably something wrong. Stop and figure out what it is.