Damn Cory, it shouldn't be this hard.
Summary....
You reassembled the flywheel and stator,
flywheel key was good
Stator coils within spec
Blk/wht wire disconnected at TORS control box (leave unplugged)
tried new cdi
Correct so far?
Unplug the blk/wht wire from the cdi. This bypasses anything that can kill the ignition, including the key and on/off switches. (if it starts you will need to plug this back in)
You snould go ahead and test the igniton coil too, just to be sure. Orange wire to ground, 1.44 - 1.76 ohms. Unscrew the spark plug boot, orange wire to spark plug wire, 5.29-7.92k ohms. Spark plug boot, 4-6k ohms.
At this point there are only four wires involved, the orange from the cdi to the coil, the blk/red and wht/red from the stator to the cdi, and various blk wires that eventually are hooked to ground. Youv've checked connections but now you need to start looking at continuity. You might have a bad wire or a bad ground. Sections of wire can be checked by poking apins into the wire and checking continuity between the pins. Sometimes it is helpful to unplug things to isolate them.