way to do your homework !
that engine will thank you for the supporting mods you just ordered
You will be pleased with the power you'll get. Ken did mine, its very similar to yours. Vito's +3, 73mm, driveline clutch, DynoPort exhaust, 34mm keihin (off of an '85 atc 250r). I am running the stock airbox though. I bought a new intake boot for that size carb and then modified the airbox with some pvc and plumbing supplies that were similar to what was pictured above somewhere. I'd like to try a 38mm carb like was suggested above, I bet it pulls quite well!! It doesn't sound like you have overlooked anything. Looking forward to hear what you think of it once you get it finished.
Without going back and reading I am assuming your head has been re chambered and squish is good ? If you are going to advance the timing I suggest doing so in small increments. A degree or even a half a degree at a time and listen for any odd noises and see if you find a sweet spot. Also like Blaaster said different timing likes different rpm ranges. A +4 timing may be favored by someone yet it's not for you.
What size rear tires?
I think a 14 front is a good choice imo. As far as the rear you should get a new sprocket also. Even if stock sprocket just a new one. The sprockets and chain marry each other. Best to do all 3 at once.
The thing about advancing the timing is it is pretty easy if you don't like the advance.
for 34/45mm 240 cc jetting @ 350' elevation of Eve/Ind, i'd buy.....
50/52 pilots
155 thru 162 mains
#6 slide
CEL needle
the dude at carb parts warehouse knows his shiz, can hook you up with everything needed, and will help you with jetting and specs, he's who turned us onto the different needles that made a huge difference
http://www.carbparts.com/keihin.html