i believe it is correct to measure about 10mm from the top edge of the piston, not the skirt, but these motors do not have a hectic taper on the piston so skirt should be fine.
Yes, then measure the bore, ideally with a bore gauge/inside micrometer, the use of a vernier caliper here can be misleading if there is a wear lip in the bore above TDC, the caliper will read the unworn part and not the worn part.
then do the sums: (Bore diameter) - (Piston Diameter) = Clearance
clearance should be:
Cast pistons (stock/proX/Namura/Vertex etc) = 0.04 - 0.05mm (0.00157" - 0.00196")
Forged Pistons (Wiseco/Wossner) = 0.06 0.08mm (0.00236" - 0.00314")
I like to run at 0.07mm with a wiseco (0.00275")
if you look on top of a new piston, you will notice it says for example 66.45mm, this means that it is actually a 66.50mm but leaves the 0.05mm for you to work out that the bore must be 0.05mm bigger than 66.45mm for clearance sake.