Def check the pilot jet, you should take it out and look through it. It has a very small hole so hold it up to the light.
Basically, you want to be able to spray carb cleaner through EVERY jet, air bleed, oriface, period, and have it come out somewhere. For instance, if you spray through the main jet, it should come out in the middle of the carb throat. Spray throught the pilot jet and it should come out a different hole. Air bleeds (that connect to fuel circuits) are in the filter side of the throat, kinda like little tiny brass jets. These and the pilot jet are very easy to clog, especially if you have had a prob with dirty fuel, bypassing the air filter, or have just had your quad sit long enough for fuel to dry in the carb.