Let me see if I can help you pin down that sand leak. Since you say the quad runs OK, without the engine behaving as if it has an air leak, it is safe to say that the sand is being sucked in upstream of the carburetor. You usually won't notice much sand downstream of the carburetor venturi, even if the leak is near here, because the velocity of the fuel/air charge coming from the carb. is powerful enough to whisk the sand away. It will tend to wind up in the crankcase, rather than sticking to the reeds.
That being said, I would first check the silicone/rubber hose that attaches the CFM airbox to the carburetor again. If this hose does not fit both flanges TIGHTLY, or if it has even a minute rip, you'll have a leak. If the hose looks OK, still take it off and bend it back and forth to expose any hidden rips/cracks.
Airbox-carb hose OK, and you're sure of it? Next, Id take a long, hard look at your air filter. What type of air filter are you running? Uni? No-toil? K&N? All of these filters MUST be oiled thoroughly in order to work properly. Just putting the filter in without any oil will allow sand to bypass the element. Also, the filter has to fit tightly against it's flange in order not to leak. Just because the sand appears to stop at a certain point in the intake tract does not mean that it isn't sneaking in past the air filter. Remember how fine sand particles really are. It doesn't take much of a leak to let 'em in.
OK. So, if you have a tight and properly-oiled air filter, and you're sure that the airbox is securely attached to the carburetor, take a long, hard look at the carb. I don't know what type of carb. you're running, but if the fitting where the oil injection line used to attach is not blocked-off, sand can come in through there. This is true even for aftermarket carb's that are supplied with a nipple on which to attach an oil injection hose.
Still can't find anything amiss? I'd remove the airbox from the quad, block off both ends of its intake tube, and put a pressure tester to it. You'll need to make a fitting on which to attach a pressure tester to one end of the intake pipe. Pump in a few psi worth of compressed air, and go after all the welds with a squirty bottle full 'O soapy water. Bubbles around any weld indicate a leak. While this condition is highly-unlikely, it is possible that one weld on your intake pipe was not done properly at the factory, and it has a slight gap present through which the sand can enter. If this is the case, the weld in question will have to be at least partially re-done.
Good Luck. Hope I gave you some ideas!!