yeah, if you're gonna be in there anyway, you might as well drop new bearings.....save you from having to split the cases again in the near future.
and no, there is absolutely no way to install a new crank w/ the motor in the frame. you gotta pull it.....in fact you pretty much have to disassemble the entire motor. this is pretty easy to do if you've got half of 2 brains as long as you've got the right tools. i've split open 2 different blaster motors now and i can do it pretty quickly. in fact the left side case half that i just installed 2 months ago is busted so i'm in the process of doin it again!
as for the stroker. don't even bother w/ the 4 over. just get the +3 crank. i've talked to my boy kennedy_power about this and he says that on the blaster engine the 4 over isn't much better than the +3 (i think he said only on the stock bore). if you do stroke it, don't bother w/ the sh*tty spacer, do it right and get the ports timed by a machinist (i'd highly recommend kennedy, but there are like 3 other dudes in this 4m that offer that service).
did you also get your head reshaped? this is critical for a blaster.