I can't tell you what size jet to run on the stock carb,but I can tell you that tossing the stock carb and replacing it with a bigger one is the best thing i did for my 240. Also, the FMF is really going to hold that bigbore back. Unless you want only low end power, dump it. Get a Factory7 (phantom), DynoPort, LRD, or one of the other pipes like that.
I believe when I had the stock mikuni carb there was a 280 main jet. I couldn't tell you what pilot jet though.