Before I moved the clip to a leaner position with the possibility of piston damage I would be trying the old choke on trick.
If you are inexperienced and cannot tell if you are lean or rich, never lean out first always try to richen first to solve the problem! Lean mixtures cause expensive damage!
Make sure the float level is correct, set the idle as per specs, take it for a ride at the problem throttle opening and reach down and pull the choke knob out a little.
If the running improves, you have too lean a setting, if it gets worse it is too rich.
My advice would be to change to a smaller carby, as your mods do not warrant such a big one.