is decking the cylinder a smart idea i know it makes horsepower but is it reliable compared to a stroker crank and if so who should i have do this (comapny) i was looking at CT racing but not sure yet.
Yes, there is a difference in head mods for riding applications. A trail head design will have a wider squish band and a little less squish clearance as compared to a drag head and differences in chamber profile as well. They are also cut different for different fuels ie: gas vs. methanol.
As for adding bolt on parts, that is fine to some degree. The headwork is matched to the porting and intended fuel. So if those aren't changed you will be just fine. That being said, you can use methanol on a gasoline head and sometimes vice-versa but you won't see the full benefits of the fuel. You can change reeds, carbs, filters, ignition systems ect. ect. Without any negative effects.