You may need to lap the flywheel.
Lapping the flywheel consists of putting some fine valve grinding paste on the taper of the crankshaft, placing the flywheel on, ( without the key), and revolving the flywheel back and forth.
When the flywheel turns more freely as the paste gets broken up, take off the flywheel, wipe out the used paste and inspect.
The grooves should now be flattened out.
If there are still grooves, repeat the operation until good mating surfaces are made.
Be sure to wash off all, and I mean all of the grinding paste.
I like to finalise by using a Duco cutting compound No 3 for the final lap.
Tension the nut to 53 ft lbs, some use Loctite but I never do, it is not the nut that holds it on, it is the pressure applied to the tapers.