You did split the cases? It probably has a shift fork out of place and not restrained like it should be.
Pull it back down.
I cannot stress it enough, test the transmission while the case sealant is still wet. Turn the input shaft and load the output shaft. Click it up and down in and out of gears and make sure they all work. If they don't work then, you've got MUCH less time and energy pulling it back down to fix the problem.